This category is for sites about stand-alone computer programs which process biological information such as genetic sequences.
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Subcategories 6
Related categories 2
Sites 30
The European Molecular Biology Open Software Suite. An open source project started by the EMBnet community in order to replace proprietary systems like GCG.
Open source Java software for checking and conversion of MicroArray Array Design data file (ADF -Array Design File- MAGE-ML).
Free software for working with and managing nucleotide sequences in multiple formats. Features include sequence annotation, restriction analysis, pattern searching, retrieval from servers. Released under GNU Public Licence.
A free sequence database application for Unix. It includes a sequence editor, several sequence aligners, phylogeny reconstruction tools, probe/primer search and generation, genome annotation and visualization. In addition to the integrated user-interface the ARB database can be accessed using Perl or C.
Software for working with post-translationally or chemically modified peptides and proteins including proteins as both sequences and chemical structures.
Workflow engine dedicated to bio-data synchronization and processing.
Offers CodonCode Aligner, a DNA sequence assembly, sequence alignment, contig editing and mutation detection software for Windows and Mac OS X.
Open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. It is also a general platform for complex network analysis and visualization.
DNA sequence assembly software package capable of fully automated sequence assembly.
Commercial software for DNA and Protein sequence analysis and manipulation. Available for Windows and Mac OS X.
A Linux assembly editing and visualization tool specifically designed for manual analysis and finishing of repeated regions.
William Pearson's package for fast sequence comparison tools.
This research software is designed for biologists and not computer scientists. It combines all the major DNA and protein sequence analysis tools into one software solution.
Collection of interoperable open source software components for visualizing, annotation and managing data.
A fairly old Windows sequence analysis tool for everyday lab use. Formerly a commercial product.
Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format.
Object-oriented regulation network simulator written in Java. Includes downloadable software and documentation. The site is in French and English.
Java application which finds gene-gene interactions (multi chromosome) using SNP with interactive visualization.
Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment.
A graphical user interface for linear modelling of cDNA and oligonucleotide microarray data to identify differentially expressed genes.
MARBL is a free (GPL) system to index the text portions of GenBank and associated NLM abstracts. Based on Mumps and the MDH.
A sequence assembly suite with SNP detection for "hard" projects.
Freeware DNA cloning, analysis and visualization software.
DNA sequence assembler and finishing tools from the UW Genome Center.
A Java tool to sort phylogenetic trees by searching for user-specified subtrees that contain a monophyletic group of interest defined by operational taxonomic units.
Developers of software for real time PCR primer design, TaqMan, molecular beacons, SYBR green, FRET, DNA microarray analysis, restriction cloning, plasmid maps, gateway cloning, protein interaction network and functional genomics.
Commercial Windows software for batch handling and analysis of nucleotide and protein sequences.
A freeware Java application that does many standard types of DNA and protein sequence analysis tasks.
An integrated portal for common web-based bioinformatics services. Built in Javascript as a standalone browser application.
Locates and displays tandem repeats in DNA sequences.
The European Molecular Biology Open Software Suite. An open source project started by the EMBnet community in order to replace proprietary systems like GCG.
DNA sequence assembly software package capable of fully automated sequence assembly.
Java application which finds gene-gene interactions (multi chromosome) using SNP with interactive visualization.
Collection of interoperable open source software components for visualizing, annotation and managing data.
Offers CodonCode Aligner, a DNA sequence assembly, sequence alignment, contig editing and mutation detection software for Windows and Mac OS X.
Open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. It is also a general platform for complex network analysis and visualization.
Software for working with post-translationally or chemically modified peptides and proteins including proteins as both sequences and chemical structures.
A fairly old Windows sequence analysis tool for everyday lab use. Formerly a commercial product.
Workflow engine dedicated to bio-data synchronization and processing.
MARBL is a free (GPL) system to index the text portions of GenBank and associated NLM abstracts. Based on Mumps and the MDH.
This research software is designed for biologists and not computer scientists. It combines all the major DNA and protein sequence analysis tools into one software solution.
William Pearson's package for fast sequence comparison tools.
A Linux assembly editing and visualization tool specifically designed for manual analysis and finishing of repeated regions.
A Java tool to sort phylogenetic trees by searching for user-specified subtrees that contain a monophyletic group of interest defined by operational taxonomic units.
Object-oriented regulation network simulator written in Java. Includes downloadable software and documentation. The site is in French and English.
DNA sequence assembler and finishing tools from the UW Genome Center.
An integrated portal for common web-based bioinformatics services. Built in Javascript as a standalone browser application.
Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment.
Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format.
A freeware Java application that does many standard types of DNA and protein sequence analysis tasks.
Free software for working with and managing nucleotide sequences in multiple formats. Features include sequence annotation, restriction analysis, pattern searching, retrieval from servers. Released under GNU Public Licence.
A sequence assembly suite with SNP detection for "hard" projects.
Commercial software for DNA and Protein sequence analysis and manipulation. Available for Windows and Mac OS X.
Commercial Windows software for batch handling and analysis of nucleotide and protein sequences.
Locates and displays tandem repeats in DNA sequences.
A graphical user interface for linear modelling of cDNA and oligonucleotide microarray data to identify differentially expressed genes.
Open source Java software for checking and conversion of MicroArray Array Design data file (ADF -Array Design File- MAGE-ML).
Developers of software for real time PCR primer design, TaqMan, molecular beacons, SYBR green, FRET, DNA microarray analysis, restriction cloning, plasmid maps, gateway cloning, protein interaction network and functional genomics.
A free sequence database application for Unix. It includes a sequence editor, several sequence aligners, phylogeny reconstruction tools, probe/primer search and generation, genome annotation and visualization. In addition to the integrated user-interface the ARB database can be accessed using Perl or C.
Freeware DNA cloning, analysis and visualization software.
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